Results

All cells

single cell

sample level

## Warning: Removed 5162 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 685 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 5162 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 685 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 5470 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 70 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5252 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 678 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5951 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 82 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5564 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 420 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7111 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7162 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5971 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 298 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6873 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 4465 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 31 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6423 rows containing missing values (`geom_text_repel()`).

Pseudobulk

sample level

## Warning: Removed 80 rows containing missing values (`geom_point()`).
## Warning: Removed 9504 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 84 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 80 rows containing missing values (`geom_point()`).
## Warning: Removed 9504 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 84 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 11 rows containing missing values (`geom_point()`).
## Warning: Removed 9582 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8315 rows containing missing values (`geom_point()`).
## Warning: Removed 9524 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 44 rows containing missing values (`geom_point()`).
## Warning: Removed 9570 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 4 rows containing missing values (`geom_point()`).
## Warning: Removed 9431 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 2 rows containing missing values (`geom_point()`).
## Warning: Removed 9330 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8 rows containing missing values (`geom_point()`).
## Warning: Removed 9562 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6148 rows containing missing values (`geom_point()`).
## Warning: Removed 9576 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 560 rows containing missing values (`geom_point()`).
## Warning: Removed 9455 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 117 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5736 rows containing missing values (`geom_point()`).
## Warning: Removed 9542 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7242 rows containing missing values (`geom_point()`).
## Warning: Removed 9559 rows containing missing values (`geom_text_repel()`).

CAR+ cells

single cell

sample level

## Warning: Removed 5666 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 636 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 5666 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 636 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 5864 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 436 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6529 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 10 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6566 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 340 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6596 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 22 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7411 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5095 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6615 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7621 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7662 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6936 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6936 rows containing missing values (`geom_text_repel()`).

Pseudobulk

sample level

## Warning: Removed 6264 rows containing missing values (`geom_point()`).
## Warning: Removed 7501 rows containing missing values (`geom_text_repel()`).

major cell type level

## Warning: Removed 6264 rows containing missing values (`geom_point()`).
## Warning: Removed 7501 rows containing missing values (`geom_text_repel()`).

cell subtype level

## Warning: Removed 2 rows containing missing values (`geom_point()`).
## Warning: Removed 7479 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7229 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 52 rows containing missing values (`geom_point()`).
## Warning: Removed 7496 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7301 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5830 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7378 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 31 rows containing missing values (`geom_point()`).
## Warning: Removed 7503 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).
## Warning: Removed 7469 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7399 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7385 rows containing missing values (`geom_text_repel()`).